Build 2D/3D spatial
transcriptomics models
⚫Scalars: The key that stores information in `anndata.obs`.
⚫ColorMap: Name of the matplotlib colormap to use when
mapping the scalars.
⚫Pick Group: One or more subtypes can be extracted
from the original active model based on the information
contained in `Scalars`.
⚫Overwrite the Active Model: If the `Overwrite the Active
Model` is on, multiple models can be extracted from the
original active model.
⚫Active Model Output: File name of the active model. If
the file name ends with `vtk`, the active model will be
automatically saved to the `./stv_model` folder.
⚫Anndata Output: File name of the anndata object. If the
file name ends with `h5ad`, the anndata object will be
automatically saved to the `./stv_model` folder.
⚫Scalars: slices
⚫ColorMap: Erdc Rainbow Bright
⚫Pick Group: E8-10_b_S13
⚫Overwrite the Active Model: False
⚫Scalars: anno_tissue (Annotation)
⚫ColorMap: Erdc Rainbow Bright
⚫Pick Group: CNS and midgut
⚫Overwrite the Active Model: True
⚫Scalars: anno_tissue (Annotation)
⚫ColorMap: Erdc Rainbow Bright
⚫Pick Group: CNS
⚫Overwrite the Active Model: False
2D spatial transcriptomics model
Multiple 3D spatial transcriptomics models
3D spatial transcriptomics model